Rui
Zhao, Ph.D.
P.O. Box 6511 MS 8101
Aurora, CO 80045
My laboratory has two major research focuses. The first is
to understand the pre-mRNA splicing machinery on a molecular
level, using X-ray crystallography in combination with molecular
biological, biochemical, and biophysical approaches. Splicing
of pre-mRNA is essential for gene expression in all eukaryotes.
In higher eukaryotes such as mammals, an average of 95% of the
nucleotides in the primary transcript (pre-mRNA) of a protein-encoding
gene are introns. These introns need to be precisely removed
by splicing before the mRNA can be transported out of the nucleus
and translated. Even a single nucleotide error causes catastrophic
consequences. Aberrant splicing contributes to at least 15%
of human genetic disorders and causes many other diseases such
as cancer. A thorough understanding of the pre-mRNA splicing
pathway may provide useful approaches for human disease therapy.
The splicing of pre-mRNA is carried out through two transesterification
reactions catalyzed by spliceosome, a huge macromolecular complex
(approximately 4.8 MDa) that contains five RNAs and numerous
(over 145 in human) protein splicing factors. Among the large
amount of protein factors, protein/protein, and protein/RNA
complexes in the spliceosome, many of them await detailed structural
analyses. Crystallographic analyses (in combination with molecular
biology, biochemical, and biophysical approaches) of these individual
proteins and complexes in the spliceosome will provide valuable
insight into intron recognition, spliceosome formation, and
catalytic mechanism.
Our second research area focuses on structure-based drug design
targeting bacterial signal transduction systems and transcriptional
complexes critical in breast tumorigenesis. Structure-based
drug design is a valuable tool in modern drug discovery which
can save years of time and millions of dollars compared to traditional
trial-and-error drug development processes. Similar approaches
have successfully generated drugs that battle various human
diseases such as HIV. We hope our structure-based drug design
efforts contribute to the development of new antibiotics and
anti-cancer drugs.
Selected Publications
Pena, P. V., F. Davrazou, X. Shi, K. Walter, V. V. Verkhusha,
O. Gozani, R. Zhao, and T. G.
Kutateladze (2006). Molecular mechanism of H3K4Me3 recognition
by Plant Homeodomain of Inhibitor of Growth 2 tumor suppressor.
Nature, 442, 100-103.
Zhao, R.*, J. Shen, M. R. Green, M. MacMorris and T. Blumenthal
(2004). Crystal structure of UAP56, a DExD/H-box protein involved
in pre-mRNA splicing and mRNA export. Structure,
12, 1373-1381. (*. Corresponding author)
Gai, D., R. Zhao, D. Li, C.V. Finkielstein, X. S. Chen
(2004). Mechanisms of conformational change for a replicative
hexameric helicase of SV40 Large Tumor antigen. Cell,
119, 47-60.
Li, D.*, R. Zhao*, W. Lilyestrom, D. Gai, R. Zhang, J.
A. Decaprio, E. Fanning, A. Jochimiak, G. Szakonyi, and X. S.
Chen (2003). Structure of the replicative helicase of the oncoprotein
SV40 large tumour antigen. Nature,
423, 512-518. (* These authors contributed equally to the work.)
Kruse, S. W., R. Zhao, D. P. Smith and D. N. M. Jones*
(2003). Structure of a specific alcohol-binding site defined by
the odorant binding protein LUSH from Drosophila melanogaster.
Nature Structural Biology, 9,
694-700.
Zhao, R., E. J. Collins, R. B. Bourret, and R. E. Silversmith
(2002). Structure and catalytic mechanism of the E. coli chemotaxis
phosphatase CheZ. Nature Structural
Biology, 9, 570-575.
Zhao, R., D. J. Loftus, E. Appella, and E. J. Collins
(1999). Structural evidence of T cell xeno-reactivity in the absence
of molecular mimicry. Journal of Experimental
Medicine, 189, 359-370.
Zhao, R., D.C. Pevear, M.J.
Kremer, V. Giranda, J. Kofron, R. Kuhn and M. G. Rossmann (1996).
Human Rhinovirus 3 at 3.0Å resolution. Structure,
4, 1205-1220.